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SMPD1 sphingomyelin phosphodiesterase 1 [ Orcinus orca (killer whale) ]

Gene ID: 101271703, updated on 8-Mar-2024

Summary

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Gene symbol
SMPD1
Gene description
sphingomyelin phosphodiesterase 1
See related
EnsemblRapid:ENSOORG00010013403
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See SMPD1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 8 NC_064566.1 (48494482..48499191, complement)

Chromosome 8 - NC_064566.1Genomic Context describing neighboring genes Neighboring gene hemopexin Neighboring gene amyloid beta precursor protein binding family B member 1 Neighboring gene caveolae associated protein 3 Neighboring gene TBC1 domain family member 12-like Neighboring gene TBC1 domain family member 12-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064566.1 Chromosome 8 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064566.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    48494482..48499191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004279254.4 → XP_004279302.1  sphingomyelin phosphodiesterase isoform X1

    Related
    ENSOORP00010017209.1, ENSOORT00010019855.1
    Conserved Domains (3) summary
    smart00741
    Location:83 → 156
    SapB; Saposin (B) Domains
    cd00842
    Location:197 → 492
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
    pfam00149
    Location:250 → 457
    Metallophos; Calcineurin-like phosphoesterase

  2. XM_033404639.2 → XP_033260530.1  sphingomyelin phosphodiesterase isoform X2

    Conserved Domains (2) summary
    smart00741
    Location:83 → 156
    SapB; Saposin (B) Domains
    cd00842
    Location:197 → 490
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

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