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LOC101271232 plectin [ Orcinus orca (killer whale) ]

Gene ID: 101271232, updated on 2-Nov-2023

Summary

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Gene symbol
LOC101271232
Gene description
plectin
See related
EnsemblRapid:ENSOORG00010004203
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Also known as
PLEC
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Genomic context

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See LOC101271232 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
40
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 17 NC_064575.1 (86698205..86755878, complement)

Chromosome 17 - NC_064575.1Genomic Context describing neighboring genes Neighboring gene epiplakin-like Neighboring gene epiplakin-like Neighboring gene uncharacterized LOC125961744 Neighboring gene poly(ADP-ribose) polymerase family member 10 Neighboring gene glutamate ionotropic receptor NMDA type subunit associated protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064575.1 Chromosome 17 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064575.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    86698205..86755878 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049700556.1 → XP_049556513.1  plectin isoform X2

  2. XM_049700557.1 → XP_049556514.1  plectin isoform X2

    Related
    ENSOORP00010004863.1, ENSOORT00010006066.1

  3. XM_049700558.1 → XP_049556515.1  plectin isoform X2

  4. XM_049700562.1 → XP_049556519.1  plectin isoform X6

    Related
    ENSOORP00010004859.1, ENSOORT00010006062.1

  5. XM_049700564.1 → XP_049556521.1  plectin isoform X8

  6. XM_049700555.1 → XP_049556512.1  plectin isoform X1

    Related
    ENSOORP00010004854.1, ENSOORT00010006057.1

  7. XM_049700563.1 → XP_049556520.1  plectin isoform X7

    Related
    ENSOORP00010004853.1, ENSOORT00010006056.1

  8. XM_049700561.1 → XP_049556518.1  plectin isoform X5

    Related
    ENSOORP00010004849.1, ENSOORT00010006052.1

  9. XM_049700559.1 → XP_049556516.1  plectin isoform X3

    Related
    ENSOORP00010004848.1, ENSOORT00010006051.1

  10. XM_049700560.1 → XP_049556517.1  plectin isoform X4

    Related
    ENSOORP00010004847.1, ENSOORT00010006050.1
Nucleotide Protein
Heading Accession and Version

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