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LOC101265404 probable galacturonosyltransferase 13 [ Solanum lycopersicum (tomato) ]

Gene ID: 101265404, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101265404
Gene description
probable galacturonosyltransferase 13
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101265404 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 3 NC_090802.1 (41000955..41009130, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 3 NC_015440.3 (45184648..45192676, complement)

Chromosome 3 - NC_015440.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104646510 Neighboring gene uncharacterized LOC109119782 Neighboring gene uncharacterized LOC109119726 Neighboring gene ribosomal protein S1, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090802.1 Reference SLM_r2.1 Primary Assembly

    Range
    41000955..41009130 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004234248.5 → XP_004234296.1  probable galacturonosyltransferase 13 isoform X2

    UniProtKB/TrEMBL
    K4BET4
    Conserved Domains (2) summary
    cd06429
    Location:210 → 523
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02870
    Location:1 → 536
    PLN02870; Probable galacturonosyltransferase

  2. XM_010319223.4 → XP_010317525.1  probable galacturonosyltransferase 13 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7FGT3
    Conserved Domains (2) summary
    cd06429
    Location:211 → 524
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02870
    Location:1 → 537
    PLN02870; Probable galacturonosyltransferase

RNA

  1. XR_011219985.1 RNA Sequence

  2. XR_740284.4 RNA Sequence

Nucleotide Protein
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