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LOC101263703 probable cellulose synthase A catalytic subunit 3 [UDP-forming] [ Solanum lycopersicum (tomato) ]

Gene ID: 101263703, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101263703
Gene description
probable cellulose synthase A catalytic subunit 3 [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101263703 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 4 NC_090803.1 (61530434..61535322, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 4 NC_015441.3 (59849609..59854534, complement)

Chromosome 4 - NC_090803.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene FCS-Like Zinc finger 5 Neighboring gene uncharacterized LOC138348342 Neighboring gene 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1 Neighboring gene uncharacterized LOC101247611

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable cellulose synthase A catalytic subunit 3 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090803.1 Reference SLM_r2.1 Primary Assembly

    Range
    61530434..61535322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004238471.5 → XP_004238519.1  probable cellulose synthase A catalytic subunit 3 [UDP-forming]

    UniProtKB/TrEMBL
    A0A3Q7G879
    Conserved Domains (3) summary
    PLN02436
    Location:1 → 1070
    PLN02436; cellulose synthase A
    pfam14569
    Location:32 → 97
    zf-UDP; Zinc-binding RING-finger
    cl11394
    Location:481 → 820
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases