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LOC101263540 callose synthase 9 [ Solanum lycopersicum (tomato) ]

Gene ID: 101263540, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101263540
Gene description
callose synthase 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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Location:
chromosome: 1
Exon count:
52
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 1 NC_015438.3 (934013..982308, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 1 NC_015438.2 (934420..982693, complement)

Chromosome 1 - NC_015438.3Genomic Context describing neighboring genes Neighboring gene probable plastid-lipid-associated protein 12, chloroplastic Neighboring gene DEAD-box ATP-dependent RNA helicase 41 Neighboring gene callose synthase 3-like Neighboring gene putative E3 ubiquitin-protein ligase LIN-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015438.3 Reference SL3.0 Primary Assembly

    Range
    934013..982308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010317693.3 → XP_010315995.1  callose synthase 9

    Conserved Domains (2) summary
    pfam02364
    Location:1034 → 1777
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:343 → 451
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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