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LOC101263199 probable xyloglucan 6-xylosyltransferase 5 [ Solanum lycopersicum (tomato) ]

Gene ID: 101263199, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101263199
Gene description
probable xyloglucan 6-xylosyltransferase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101263199 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 3 NC_015440.3 (66848980..66852685, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 3 NC_015440.2 (65364796..65368479, complement)

Chromosome 3 - NC_015440.3Genomic Context describing neighboring genes Neighboring gene probable receptor-like protein kinase At5g61350 Neighboring gene uncharacterized LOC101247120 Neighboring gene probable xyloglucan galactosyltransferase GT11 Neighboring gene vesicle transport v-SNARE 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015440.3 Reference SL3.0 Primary Assembly

    Range
    66848980..66852685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010320517.3 → XP_010318819.1  probable xyloglucan 6-xylosyltransferase 5

    UniProtKB/TrEMBL
    A0A3Q7FTZ6
    Conserved Domains (1) summary
    PLN03182
    Location:33 → 444
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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