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LOC101262875 mitochondrial carnitine/acylcarnitine carrier-like protein [ Solanum lycopersicum (tomato) ]

Gene ID: 101262875, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101262875
Gene description
mitochondrial carnitine/acylcarnitine carrier-like protein
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101262875 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 10 NC_015447.3 (60915096..60918970, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 10 NC_015447.2 (60786206..60790056, complement)

Chromosome 10 - NC_015447.3Genomic Context describing neighboring genes Neighboring gene probable protein phosphatase 2C 55 Neighboring gene Zinc finger transcription factor 61 Neighboring gene glycosyltransferase-like protein Neighboring gene NAC domain-containing protein 105

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit. Xiao H, et al. Science, 2008 Mar 14. PMID 18339939
  2. Expressed sequence tags from the laboratory-grown miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom and mining for single nucleotide polymorphisms and insertions/deletions in tomato cultivars. Yamamoto N, et al. Gene, 2005 Aug 15. PMID 15975739
  3. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ornithine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial carnitine/acylcarnitine carrier-like protein
Names
mitochondrial carrier protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001320626.1 → NP_001307555.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AEKE03003146, AI483139, AW931960, BE460491, BG126310, BP905013
    UniProtKB/TrEMBL
    B1N662
    Conserved Domains (1) summary
    pfam00153
    Location:211 → 297
    Mito_carr; Mitochondrial carrier protein

  2. NM_001320629.1 → NP_001307558.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AEKE03003146, AK327014, BP896319
    UniProtKB/TrEMBL
    B1N662
    Conserved Domains (1) summary
    pfam00153
    Location:211 → 297
    Mito_carr; Mitochondrial carrier protein

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015447.3 Reference SL3.0 Primary Assembly

    Range
    60915096..60918970 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010313784.3 → XP_010312086.1  mitochondrial carnitine/acylcarnitine carrier-like protein isoform X1

    See identical proteins and their annotated locations for XP_010312086.1

    UniProtKB/TrEMBL
    B1N662
    Conserved Domains (1) summary
    pfam00153
    Location:211 → 297
    Mito_carr; Mitochondrial carrier protein

  2. XM_010313783.3 → XP_010312085.1  mitochondrial carnitine/acylcarnitine carrier-like protein isoform X1

    See identical proteins and their annotated locations for XP_010312085.1

    UniProtKB/TrEMBL
    B1N662
    Conserved Domains (1) summary
    pfam00153
    Location:211 → 297
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
Heading Accession and Version

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