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GPI glucose-6-phosphate isomerase [ Solanum lycopersicum (tomato) ]

Gene ID: 101262594, updated on 9-Nov-2023

Summary

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Gene symbol
GPI
Gene description
glucose-6-phosphate isomerase
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See GPI in Genome Data Viewer
Location:
chromosome: 12
Exon count:
23
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 12 NC_015449.3 (5260525..5274348)
102 previous assembly SL2.50 (GCF_000188115.3) 12 NC_015449.2 (5260486..5274274)

Chromosome 12 - NC_015449.3Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g53430 Neighboring gene protein trichome birefringence-like 41 Neighboring gene uncharacterized LOC104644853 Neighboring gene 50S ribosomal protein L13, chloroplastic Neighboring gene uncharacterized LOC109119145

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate derivative binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucose-6-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucose 6-phosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucose-6-phosphate isomerase
NP_001265881.1
XP_010313627.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001278952.1 → NP_001265881.1  glucose-6-phosphate isomerase

    See identical proteins and their annotated locations for NP_001265881.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ451687
    UniProtKB/TrEMBL
    A0A3Q7J5N2, Q1PCD2
    Conserved Domains (3) summary
    PLN02649
    Location:1 → 558
    PLN02649; glucose-6-phosphate isomerase
    cd05015
    Location:122 → 288
    SIS_PGI_1; Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of ...
    cd05016
    Location:336 → 522
    SIS_PGI_2; Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of ...

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015449.3 Reference SL3.0 Primary Assembly

    Range
    5260525..5274348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010315325.3 → XP_010313627.1  glucose-6-phosphate isomerase isoform X1

    UniProtKB/TrEMBL
    A0A3Q7J5N2
    Conserved Domains (3) summary
    PLN02649
    Location:1 → 564
    PLN02649; glucose-6-phosphate isomerase
    cd05015
    Location:122 → 288
    SIS_PGI_1; Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of ...
    cd05016
    Location:336 → 528
    SIS_PGI_2; Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of ...
Nucleotide Protein
Heading Accession and Version

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