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LOC101261310 probable galacturonosyltransferase 11 [ Solanum lycopersicum (tomato) ]

Gene ID: 101261310, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101261310
Gene description
probable galacturonosyltransferase 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101261310 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 3 NC_015440.3 (66172913..66178056, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 3 NC_015440.2 (64688717..64693839, complement)

Chromosome 3 - NC_015440.3Genomic Context describing neighboring genes Neighboring gene uncharacterized ATP-dependent helicase YprA Neighboring gene isoaspartyl peptidase/L-asparaginase 1 Neighboring gene flavonol 3-sulfotransferase Neighboring gene uncharacterized LOC101244175 Neighboring gene transcription factor FRUITFULL

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015440.3 Reference SL3.0 Primary Assembly

    Range
    66172913..66178056 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004236024.4 → XP_004236072.1  probable galacturonosyltransferase 11

    UniProtKB/TrEMBL
    A0A3Q7FRM7
    Conserved Domains (2) summary
    cd06429
    Location:231 → 524
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02742
    Location:1 → 536
    PLN02742; Probable galacturonosyltransferase
Nucleotide Protein
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