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LOC101260637 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 [ Solanum lycopersicum (tomato) ]

Gene ID: 101260637, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101260637
Gene description
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101260637 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 4 NC_090803.1 (65433388..65436497, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 4 NC_015441.3 (63688294..63691315, complement)

Chromosome 4 - NC_090803.1Genomic Context describing neighboring genes Neighboring gene protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like Neighboring gene dem protein Neighboring gene UDP-glucuronate:xylan alpha-glucuronosyltransferase 2-like Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene protein TIC 22, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090803.1 Reference SLM_r2.1 Primary Assembly

    Range
    65433388..65436497 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010322032.4 → XP_010320334.3  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2

Nucleotide Protein
Heading Accession and Version

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