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GBSS1 granule-bound starch synthase 1 [ Solanum lycopersicum (tomato) ]

Gene ID: 101259777, updated on 1-Nov-2024

Summary

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Gene symbol
GBSS1
Gene description
granule-bound starch synthase 1
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
waxy; GBSSI
Summary
GBSS1 codes for an enzyme of the starch synthesis pathway that is responsible for the synthesis of amylose. [provided by RefSeq, May 2016]
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Genomic context

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See GBSS1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 8 NC_090807.1 (68035398..68038720, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 8 NC_015445.3 (65936536..65939858, complement)

Chromosome 8 - NC_090807.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 9 Neighboring gene glucan endo-1,3-beta-glucosidase 11-like Neighboring gene uncharacterized LOC101259469 Neighboring gene uncharacterized LOC101259181

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Granule-bound starch synthase (GBSSI) gene phylogeny of wild tomatoes (Solanum L. section Lycopersicon [Mill.] Wettst. subsection Lycopersicon). Peralta IE, et al. Am J Bot, 2001 Oct. PMID 21669622
  2. Expressed sequence tags from the laboratory-grown miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom and mining for single nucleotide polymorphisms and insertions/deletions in tomato cultivars. Yamamoto N, et al. Gene, 2005 Aug 15. PMID 15975739
  3. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
granule-bound starch synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001324528.1 → NP_001311457.1  granule-bound starch synthase 1

    Status: VALIDATED

    Source sequence(s)
    AI776949, AK320216, DB684011
    UniProtKB/TrEMBL
    A0A3Q7IRF5
    Conserved Domains (2) summary
    cd03791
    Location:77 → 574
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    TIGR02095
    Location:76 → 577
    glgA; glycogen/starch synthase, ADP-glucose type

  2. NM_001324529.1 → NP_001311458.1  granule-bound starch synthase 1

    Status: VALIDATED

    Source sequence(s)
    AI776949, BP882026, BP905690, BP909548, BW692939, DB699344
    UniProtKB/TrEMBL
    A0A3Q7IRF5
    Conserved Domains (2) summary
    cd03791
    Location:77 → 574
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    TIGR02095
    Location:76 → 577
    glgA; glycogen/starch synthase, ADP-glucose type

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090807.1 Reference SLM_r2.1 Primary Assembly

    Range
    68035398..68038720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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