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LOC101256672 probable galacturonosyltransferase 10 [ Solanum lycopersicum (tomato) ]

Gene ID: 101256672, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101256672
Gene description
probable galacturonosyltransferase 10
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101256672 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 4 NC_015441.3 (55645056..55654101, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 4 NC_015441.2 (55634281..55643257, complement)

Chromosome 4 - NC_015441.3Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At3g23880-like Neighboring gene F-box only protein 8 Neighboring gene probable protein phosphatase 2C 11 Neighboring gene ras-related protein RABC1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015441.3 Reference SL3.0 Primary Assembly

    Range
    55645056..55654101 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004237666.4 → XP_004237714.1  probable galacturonosyltransferase 10

    UniProtKB/TrEMBL
    A0A3Q7GYG0
    Conserved Domains (2) summary
    cd06429
    Location:229 → 522
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02742
    Location:1 → 534
    PLN02742; Probable galacturonosyltransferase
Nucleotide Protein
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