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LOC101256637 DNA polymerase delta catalytic subunit [ Solanum lycopersicum (tomato) ]

Gene ID: 101256637, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101256637
Gene description
DNA polymerase delta catalytic subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101256637 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
30
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 10 NC_015447.3 (62479296..62500702)
102 previous assembly SL2.50 (GCF_000188115.3) 10 NC_015447.2 (62354163..62375571)

Chromosome 10 - NC_015447.3Genomic Context describing neighboring genes Neighboring gene presenilin-like protein At1g08700 Neighboring gene protein GrpE Neighboring gene uncharacterized LOC104644374 Neighboring gene protein DETOXIFICATION 24 Neighboring gene ELMO domain-containing protein A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-DNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication proofreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair, gap-filling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA gap filling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of delta DNA polymerase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA polymerase delta catalytic subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015447.3 Reference SL3.0 Primary Assembly

    Range
    62479296..62500702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004249301.4 → XP_004249349.1  DNA polymerase delta catalytic subunit

    UniProtKB/TrEMBL
    A0A3Q7ILH5
    Conserved Domains (4) summary
    cd05777
    Location:290 → 518
    DNA_polB_delta_exo; DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase
    cd05533
    Location:567 → 960
    POLBc_delta; DNA polymerase type-B delta subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. Presently, no direct data is available regarding ...
    PTZ00166
    Location:57 → 1085
    PTZ00166; DNA polymerase delta catalytic subunit; Provisional
    pfam14260
    Location:996 → 1067
    zf-C4pol; C4-type zinc-finger of DNA polymerase delta
Nucleotide Protein
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