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LOC101255198 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [ Solanum lycopersicum (tomato) ]

Gene ID: 101255198, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101255198
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101255198 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 5 NC_090804.1 (67120550..67133011)
103 previous assembly SL3.0 (GCF_000188115.4) 5 NC_015442.3 (64717119..64729183)

Chromosome 5 - NC_090804.1Genomic Context describing neighboring genes Neighboring gene phloretin 4'-O-glucosyltransferase Neighboring gene protein transport protein SEC23 E Neighboring gene protein SELF PRUNING 5G Neighboring gene organic cation/carnitine transporter 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein O-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090804.1 Reference SLM_r2.1 Primary Assembly

    Range
    67120550..67133011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004239798.4 → XP_004239846.2  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X1

  2. XM_069298522.1 → XP_069154623.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X2

  3. XM_069298523.1 → XP_069154624.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X3

Nucleotide Protein
Heading Accession and Version

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