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LOC101252941 granule-bound starch synthase 2, chloroplastic/amyloplastic [ Solanum lycopersicum (tomato) ]

Gene ID: 101252941, updated on 18-Sep-2024

Summary

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Gene symbol
LOC101252941
Gene description
granule-bound starch synthase 2, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101252941 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 2 NC_015439.3 (50867842..50874329)
102 previous assembly SL2.50 (GCF_000188115.3) 2 NC_015439.2 (50230519..50236995)

Chromosome 2 - NC_015439.3Genomic Context describing neighboring genes Neighboring gene structural maintenance of chromosomes protein 4 Neighboring gene uncharacterized LOC101244638 Neighboring gene DCN1-like protein 2 Neighboring gene uncharacterized LOC112940991

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
granule-bound starch synthase 2, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015439.3 Reference SL3.0 Primary Assembly

    Range
    50867842..50874329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004232171.4 → XP_004232219.1  granule-bound starch synthase 2, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    K4BBV6
    Conserved Domains (2) summary
    cd03791
    Location:278 → 761
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    TIGR02095
    Location:277 → 761
    glgA; glycogen/starch synthase, ADP-glucose type
Nucleotide Protein
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