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LOC101249076 beta-1,3-galactosyltransferase GALT1 [ Solanum lycopersicum (tomato) ]

Gene ID: 101249076, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101249076
Gene description
beta-1,3-galactosyltransferase GALT1
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101249076 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 5 NC_015442.3 (2352420..2358823, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 5 NC_015442.2 (2352383..2358762, complement)

Chromosome 5 - NC_015442.3Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L18 Neighboring gene protein DMP8-like Neighboring gene intracellular ribonuclease LX Neighboring gene ribonuclease T2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase GALT1
Names
beta-1,3-galactosyltransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015442.3 Reference SL3.0 Primary Assembly

    Range
    2352420..2358823 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010322397.3 → XP_010320699.1  beta-1,3-galactosyltransferase GALT1

    See identical proteins and their annotated locations for XP_010320699.1

    UniProtKB/TrEMBL
    A0A3Q7H648
    Conserved Domains (3) summary
    PLN03133
    Location:1 → 629
    PLN03133; beta-1,3-galactosyltransferase; Provisional
    pfam00337
    Location:163 → 350
    Gal-bind_lectin; Galactoside-binding lectin
    cl21608
    Location:393 → 577
    Galactosyl_T; Galactosyltransferase

  2. XM_004238777.4 → XP_004238825.1  beta-1,3-galactosyltransferase GALT1

    See identical proteins and their annotated locations for XP_004238825.1

    UniProtKB/TrEMBL
    A0A3Q7H648
    Conserved Domains (3) summary
    PLN03133
    Location:1 → 629
    PLN03133; beta-1,3-galactosyltransferase; Provisional
    pfam00337
    Location:163 → 350
    Gal-bind_lectin; Galactoside-binding lectin
    cl21608
    Location:393 → 577
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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