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LOC101248962 inositol phosphorylceramide glucuronosyltransferase 1 [ Solanum lycopersicum (tomato) ]

Gene ID: 101248962, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101248962
Gene description
inositol phosphorylceramide glucuronosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101248962 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 4 NC_090803.1 (3812588..3819740, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 4 NC_015441.3 (3240016..3247003, complement)

Chromosome 4 - NC_090803.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104646708 Neighboring gene phosphoenolpyruvate carboxylase kinase 2 Neighboring gene beta-amyrin 16-alpha-hydroxylase CYP87D16-like Neighboring gene protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic Neighboring gene transfer RNA arginine (anticodon CCG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inositol phosphorylceramide glucuronosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090803.1 Reference SLM_r2.1 Primary Assembly

    Range
    3812588..3819740 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004236744.5 → XP_004236792.1  inositol phosphorylceramide glucuronosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7FYV8
    Conserved Domains (1) summary
    cd02537
    Location:28 → 275
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

  2. XM_010320981.4 → XP_010319283.1  inositol phosphorylceramide glucuronosyltransferase 1 isoform X2

    Conserved Domains (1) summary
    cd02537
    Location:28 → 275
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
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