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LOC101247727 hydroxyproline O-galactosyltransferase GALT6 [ Solanum lycopersicum (tomato) ]

Gene ID: 101247727, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101247727
Gene description
hydroxyproline O-galactosyltransferase GALT6
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101247727 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 6 NC_015443.3 (43886130..43890043, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 6 NC_015443.2 (43744722..43748979, complement)

Chromosome 6 - NC_015443.3Genomic Context describing neighboring genes Neighboring gene basic proline-rich protein Neighboring gene HIPL1 protein Neighboring gene microRNA MIR9477 Neighboring gene uncharacterized LOC101247228 Neighboring gene uncharacterized LOC101246933

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6
Names
probable beta-1,3-galactosyltransferase 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015443.3 Reference SL3.0 Primary Assembly

    Range
    43886130..43890043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004241511.4 → XP_004241559.1  hydroxyproline O-galactosyltransferase GALT6

    UniProtKB/TrEMBL
    A0A3Q7GXY6
    Conserved Domains (2) summary
    pfam00337
    Location:178 → 383
    Gal-bind_lectin; Galactoside-binding lectin
    cl21608
    Location:431 → 611
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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