U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC101245223 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [ Solanum lycopersicum (tomato) ]

Gene ID: 101245223, updated on 1-Nov-2024

Summary

Go to the top of the page Help
Gene symbol
LOC101245223
Gene description
1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC101245223 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 2 NC_090801.1 (59301084..59302329, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 2 NC_015439.3 (43674067..43675161, complement)

Chromosome 2 - NC_090801.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101246010 Neighboring gene allantoinase Neighboring gene uncharacterized LOC101245620 Neighboring gene general transcription and DNA repair factor IIH subunit TFB2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phylloquinone biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090801.1 Reference SLM_r2.1 Primary Assembly

    Range
    59301084..59302329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004232811.5 → XP_004232859.1  1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1

    UniProtKB/TrEMBL
    A0A3Q7F4J8
    Conserved Domains (1) summary
    cl00509
    Location:17 → 162
    hot_dog; The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases