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LOC101244231 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [ Solanum lycopersicum (tomato) ]

Gene ID: 101244231, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101244231
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101244231 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 9 NC_090808.1 (69236228..69248825)
103 previous assembly SL3.0 (GCF_000188115.4) 9 NC_015446.3 (72327105..72339388)

Chromosome 9 - NC_090808.1Genomic Context describing neighboring genes Neighboring gene glycine-rich protein-like Neighboring gene RNA helicase family protein Neighboring gene pentatricopeptide repeat-containing protein Neighboring gene cysteine proteinase inhibitor B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein O-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090808.1 Reference SLM_r2.1 Primary Assembly

    Range
    69236228..69248825
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004247979.5 → XP_004248027.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X1

    UniProtKB/TrEMBL
    A0A3Q7J4M7
    Conserved Domains (6) summary
    COG0457
    Location:112 → 366
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:265 → 293
    TPR; TPR repeat [structural motif]
    cd15832
    Location:117 → 161
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:265 → 298
    TPR_1; Tetratricopeptide repeat
    cl10013
    Location:600 → 960
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    cl24038
    Location:116 → 322
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  2. XM_069288874.1 → XP_069144975.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X2

Nucleotide Protein
Heading Accession and Version

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