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LOC101236274 mitochondrial basic amino acids transporter [ Hydra vulgaris (swiftwater hydra) ]

Gene ID: 101236274, updated on 27-Jun-2024

Summary

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Gene symbol
LOC101236274
Gene description
mitochondrial basic amino acids transporter
See related
EnsemblRapid:LOC101236274
Gene type
protein coding
RefSeq status
MODEL
Organism
Hydra vulgaris
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
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Genomic context

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See LOC101236274 in Genome Data Viewer
Location:
chromosome: 09
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current HydraT2T_105 (GCF_037890685.1) 09 NC_088972.1 (58666947..58735927)
RS_2024_06 current HydraT2T_AEP (GCF_038396675.1) 09 NC_088928.1 (62935535..62971187)
103 previous assembly Hydra_105_v3 (GCF_022113875.1) 5 NC_061160.1 (58681431..58721253)

Chromosome 09 - NC_088972.1Genomic Context describing neighboring genes Neighboring gene nonsense-mediated mRNA decay factor SMG8 Neighboring gene protein N-terminal asparagine amidohydrolase Neighboring gene uncharacterized LOC136095074 Neighboring gene uncharacterized LOC136095075 Neighboring gene uncharacterized LOC124811675 Neighboring gene uncharacterized LOC101238413 Neighboring gene uncharacterized LOC136095220

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial basic amino acids transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037890685.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HydraT2T_105 Primary Assembly

Genomic

  1. NC_088972.1 Reference HydraT2T_105 Primary Assembly

    Range
    58666947..58735927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065826162.1 → XP_065682234.1  mitochondrial basic amino acids transporter isoform X1

  2. XM_047277747.2 → XP_047133703.1  mitochondrial basic amino acids transporter isoform X1

    Related
    XP_047133703.1

Alternate HydraT2T_AEP

Genomic

  1. NC_088928.1 Alternate HydraT2T_AEP

    Range
    62935535..62971187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065806298.1 → XP_065662370.1  mitochondrial basic amino acids transporter isoform X2

  2. XM_065806297.1 → XP_065662369.1  mitochondrial basic amino acids transporter isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials