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LOC101220785 mediator of RNA polymerase II transcription subunit 23 [ Cucumis sativus (cucumber) ]

Gene ID: 101220785, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101220785
Gene description
mediator of RNA polymerase II transcription subunit 23
Locus tag
Csa_009222
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101220785 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
21
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 5 NC_026659.2 (23338949..23399273, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 5 NC_026659.1 (19626320..19687373, complement)

Chromosome 5 - NC_026659.2Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene probable RNA-dependent RNA polymerase 1 Neighboring gene uncharacterized LOC116403848 Neighboring gene uncharacterized LOC116403847 Neighboring gene F-box protein SKIP28 Neighboring gene uncharacterized LOC116404031

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026659.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    23338949..23399273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011657152.2 → XP_011655454.1  mediator of RNA polymerase II transcription subunit 23

    Conserved Domains (1) summary
    pfam11573
    Location:697 → 1322
    Med23; Mediator complex subunit 23
Nucleotide Protein
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