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CUPG1 probable polygalacturonase At1g80170 [ Cucumis sativus (cucumber) ]

Gene ID: 101217558, updated on 14-Dec-2023

Summary

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Gene symbol
CUPG1
Gene description
probable polygalacturonase At1g80170
Locus tag
Csa_007783
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See CUPG1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 5 NC_026659.2 (25688868..25692049)
101 previous assembly ASM407v2 (GCF_000004075.2) 5 NC_026659.1 (21970421..21973268)

Chromosome 5 - NC_026659.2Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase subunit 10-like protein Neighboring gene pyrrolidone-carboxylate peptidase Neighboring gene uncharacterized LOC116403813 Neighboring gene uncharacterized LOC105435562 Neighboring gene polygalacturonase At1g48100 Neighboring gene 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. Li Z, et al. BMC Genomics, 2011 Nov 2. PMID 22047402, Free PMC Article
  2. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. Guo S, et al. BMC Genomics, 2010 Jun 17. PMID 20565788, Free PMC Article
  3. The genome of the cucumber, Cucumis sativus L. Huang S, et al. Nat Genet, 2009 Dec. PMID 19881527
  4. An integrated genetic and cytogenetic map of the cucumber genome. Ren Y, et al. PLoS One, 2009 Jun 4. PMID 19495411, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable polygalacturonase At1g80170
Names
polygalacturonase
NP_001292614.1
XP_011655619.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001305685.1 → NP_001292614.1  probable polygalacturonase At1g80170 precursor

    See identical proteins and their annotated locations for NP_001292614.1

    Status: PROVISIONAL

    Source sequence(s)
    AB035890
    UniProtKB/TrEMBL
    Q9SLP3
    Conserved Domains (2) summary
    pfam00295
    Location:93 → 407
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:57 → 422
    PL-6; Polysaccharide Lyase Family 6

RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026659.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    25688868..25692049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011657317.2 → XP_011655619.1  probable polygalacturonase At1g80170 isoform X1

    See identical proteins and their annotated locations for XP_011655619.1

    UniProtKB/TrEMBL
    A0A0A0KQ65
    Conserved Domains (2) summary
    pfam00295
    Location:93 → 407
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:57 → 438
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases