U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC101217095 probable beta-1,4-xylosyltransferase IRX9H [ Cucumis sativus (cucumber) ]

Gene ID: 101217095, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC101217095
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Locus tag
Csa_000797
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC101217095 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (39674060..39678577, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (38584885..38590037, complement)

Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene carotenoid 9,10(9',10')-cleavage dioxygenase 1 Neighboring gene VAN3-binding protein Neighboring gene U-box domain-containing protein 26 Neighboring gene protein EMBRYONIC FLOWER 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    39674060..39678577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011654318.2 → XP_011652620.1  probable beta-1,4-xylosyltransferase IRX9H

    See identical proteins and their annotated locations for XP_011652620.1

    UniProtKB/TrEMBL
    A0A0A0LHV9
    Conserved Domains (1) summary
    cd00218
    Location:182 → 413
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  2. XM_011654317.2 → XP_011652619.1  probable beta-1,4-xylosyltransferase IRX9H

    See identical proteins and their annotated locations for XP_011652619.1

    UniProtKB/TrEMBL
    A0A0A0LHV9
    Conserved Domains (1) summary
    cd00218
    Location:182 → 413
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  3. XM_004136170.3 → XP_004136218.1  probable beta-1,4-xylosyltransferase IRX9H

    See identical proteins and their annotated locations for XP_004136218.1

    UniProtKB/TrEMBL
    A0A0A0LHV9
    Conserved Domains (1) summary
    cd00218
    Location:182 → 413
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

RNA

  1. XR_969154.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases