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LOC101208076 probable pectate lyase 5 [ Cucumis sativus (cucumber) ]

Gene ID: 101208076, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101208076
Gene description
probable pectate lyase 5
Locus tag
Csa_018558
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101208076 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 2 NC_026656.2 (17302966..17305165, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 2 NC_026656.1 (15898225..15900245, complement)

Chromosome 2 - NC_026656.2Genomic Context describing neighboring genes Neighboring gene protein terminal ear1 Neighboring gene T-complex protein 1 subunit epsilon Neighboring gene ALBINO3-like protein 1, chloroplastic Neighboring gene photosystem II core complex proteins psbY, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. Li Z, et al. BMC Genomics, 2011 Nov 2. PMID 22047402, Free PMC Article
  2. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. Guo S, et al. BMC Genomics, 2010 Jun 17. PMID 20565788, Free PMC Article
  3. The genome of the cucumber, Cucumis sativus L. Huang S, et al. Nat Genet, 2009 Dec. PMID 19881527
  4. An integrated genetic and cytogenetic map of the cucumber genome. Ren Y, et al. PLoS One, 2009 Jun 4. PMID 19495411, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026656.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    17302966..17305165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004143006.3 → XP_004143054.1  probable pectate lyase 5

    See identical proteins and their annotated locations for XP_004143054.1

    UniProtKB/TrEMBL
    A0A0A0LKL0
    Conserved Domains (1) summary
    smart00656
    Location:141 → 336
    Amb_all; Amb_all domain
Nucleotide Protein
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