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LOC101206130 flowering locus K homology domain [ Cucumis sativus (cucumber) ]

Gene ID: 101206130, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101206130
Gene description
flowering locus K homology domain
Locus tag
Csa_019400
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101206130 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 2 NC_026656.2 (2030353..2036450, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 2 NC_026656.1 (1891691..1897724, complement)

Chromosome 2 - NC_026656.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116402257 Neighboring gene protein ACCELERATED CELL DEATH 6 Neighboring gene uncharacterized protein At2g34160 Neighboring gene protein WVD2-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
flowering locus K homology domain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026656.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    2030353..2036450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011650440.2 → XP_011648742.1  flowering locus K homology domain isoform X2

    UniProtKB/TrEMBL
    A0A0A0LJ91
    Conserved Domains (2) summary
    cd00105
    Location:363 → 426
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:177 → 244
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  2. XM_004139200.3 → XP_004139248.1  flowering locus K homology domain isoform X1

    UniProtKB/TrEMBL
    A0A0A0LJ91
    Conserved Domains (1) summary
    cl00098
    Location:362 → 430
    KH-I; K homology (KH) RNA-binding domain, type I

  3. XM_031881102.1 → XP_031736962.1  flowering locus K homology domain isoform X1

    UniProtKB/TrEMBL
    A0A0A0LJ91
    Conserved Domains (1) summary
    cl00098
    Location:362 → 430
    KH-I; K homology (KH) RNA-binding domain, type I
Nucleotide Protein
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