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LOC101202789 probable pectate lyase 7 [ Cucumis sativus (cucumber) ]

Gene ID: 101202789, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101202789
Gene description
probable pectate lyase 7
Locus tag
Csa_001450
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101202789 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (34017809..34020010, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (32974469..32976651, complement)

Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101211026 Neighboring gene AP2-like ethylene-responsive transcription factor At1g16060 Neighboring gene FACT complex subunit SSRP1 Neighboring gene auxin efflux carrier component 8 Neighboring gene mitochondrial outer membrane protein porin of 34 kDa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    34017809..34020010 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004147414.3 → XP_004147462.2  probable pectate lyase 7

    See identical proteins and their annotated locations for XP_004147462.2

    UniProtKB/TrEMBL
    A0A0A0LCU3
    Conserved Domains (2) summary
    smart00656
    Location:167 → 361
    Amb_all; Amb_all domain
    pfam04431
    Location:27 → 81
    Pec_lyase_N; Pectate lyase, N-terminus
Nucleotide Protein
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