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LOC101202728 uncharacterized LOC101202728 [ Zea mays ]

Gene ID: 101202728, updated on 10-Oct-2024

Summary

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Gene symbol
LOC101202728
Gene description
uncharacterized LOC101202728
Locus tag
ZEAMMB73_Zm00001d018560
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
Tie-dyed2; GRMZM2G004087; GRMZM2G553532; GRMZM5G840560
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC101202728 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
42
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (225713034..225789341)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (223226648..223302951)

Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene chloroplast channel forming outer membrane protein Neighboring gene uncharacterized LOC118472127 Neighboring gene Protein ELC-like Neighboring gene uncharacterized LOC103631121

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The tie-dyed pathway promotes symplastic trafficking in the phloem. Baker RF, et al. Plant Signal Behav, 2013 Jun. PMID 23603956, Free PMC Article
  2. Tie-dyed2 encodes a callose synthase that functions in vein development and affects symplastic trafficking within the phloem of maize leaves. Slewinski TL, et al. Plant Physiol, 2012 Nov. PMID 22932757, Free PMC Article
  3. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase
Names
Callose synthase 3
putative glycosyl transferase family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001398272.1 → NP_001385201.1  callose synthase

    Status: VALIDATED

    Source sequence(s)
    AY107727, CABHLF010000016, JQ361049

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    225713034..225789341
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001279538.1: Suppressed sequence

    Description
    NM_001279538.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

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