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chst15 carbohydrate sulfotransferase 15 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101174629, updated on 9-Nov-2023

Summary

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Gene symbol
chst15
Gene description
carbohydrate sulfotransferase 15
See related
EnsemblRapid:ENSORLG00000009599
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See chst15 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 19 NC_019877.2 (11514015..11549054, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 19 NC_019877.1 (10352742..10387568, complement)

Chromosome 19 - NC_019877.2Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptor 26 Neighboring gene carboxypeptidase X (M14 family), member 2 Neighboring gene uncharacterized LOC105354123 Neighboring gene zinc finger BED domain-containing protein 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hexose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019877.2 Reference ASM223467v1 Primary Assembly

    Range
    11514015..11549054 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023949652.1 → XP_023805420.1  carbohydrate sulfotransferase 15

    UniProtKB/TrEMBL
    A0A3P9H9U8, H2M0V7
    Related
    ENSORLP00000012034.2, ENSORLT00000012035.3
    Conserved Domains (1) summary
    pfam13469
    Location:240 → 481
    Sulfotransfer_3; Sulfotransferase family

  2. XM_023949653.1 → XP_023805421.1  carbohydrate sulfotransferase 15

    UniProtKB/TrEMBL
    A0A3P9H9U8, H2M0V7
    Conserved Domains (1) summary
    pfam13469
    Location:240 → 481
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
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