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LOC101174218 dnaJ homolog subfamily B member 6-like [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101174218, updated on 25-Jan-2024

Summary

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Gene symbol
LOC101174218
Gene description
dnaJ homolog subfamily B member 6-like
See related
EnsemblRapid:ENSORLG00000004236
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See LOC101174218 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 17 NC_019875.2 (5017073..5024014)
102 previous assembly ASM31367v1 (GCF_000313675.1) 17 NC_019875.1 (4975605..4982557)

Chromosome 17 - NC_019875.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 200C Neighboring gene exocyst complex component 3 Neighboring gene potassium voltage-gated channel subfamily B member 2-like Neighboring gene E3 ubiquitin-protein ligase RNF31

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone-mediated protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily B member 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019875.2 Reference ASM223467v1 Primary Assembly

    Range
    5017073..5024014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011486094.3 → XP_011484396.1  dnaJ homolog subfamily B member 6-like isoform X2

    UniProtKB/TrEMBL
    A0A3P9J145, H2LH51
    Conserved Domains (1) summary
    pfam00226
    Location:3 → 66
    DnaJ; DnaJ domain

  2. XM_004078621.4 → XP_004078669.1  dnaJ homolog subfamily B member 6-like isoform X1

    UniProtKB/TrEMBL
    A0A3P9K5P8
    Related
    ENSORLP00000005306.3, ENSORLT00000005307.3
    Conserved Domains (1) summary
    pfam00226
    Location:3 → 66
    DnaJ; DnaJ domain
Nucleotide Protein
Heading Accession and Version

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