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dusp13 dual specificity phosphatase 13 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101170962, updated on 9-Nov-2023

Summary

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Gene symbol
dusp13
Gene description
dual specificity phosphatase 13
See related
EnsemblRapid:ENSORLG00000027749
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See dusp13 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 19 NC_019877.2 (10255851..10256936, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 19 NC_019877.1 (9024019..9025106, complement)

Chromosome 19 - NC_019877.2Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase DUPD1 Neighboring gene dual specificity protein phosphatase 13 Neighboring gene sterile alpha motif domain containing 8 Neighboring gene voltage-dependent anion-selective channel protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MAP kinase phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine/serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of MAPK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dual specificity protein phosphatase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019877.2 Reference ASM223467v1 Primary Assembly

    Range
    10255851..10256936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011488331.3 → XP_011486633.1  dual specificity protein phosphatase 13

    UniProtKB/TrEMBL
    A0A3B3IBU0
    Related
    ENSORLP00000041355.1, ENSORLT00000032671.2
    Conserved Domains (1) summary
    cd00127
    Location:30 → 172
    DSPc; Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or ...
Nucleotide Protein
Heading Accession and Version

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