U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

eogt EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101170339, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
eogt
Gene description
EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
See related
EnsemblRapid:ENSORLG00000007962
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See eogt in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 5 NC_019863.2 (15618506..15632351)
102 previous assembly ASM31367v1 (GCF_000313675.1) 5 NC_019863.1 (14541750..14555307)

Chromosome 5 - NC_019863.2Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene ubiquitin-like modifier activating enzyme 3 Neighboring gene TATA element modulatory factor 1 Neighboring gene uncharacterized LOC110015128 Neighboring gene protein FAM19A1 Neighboring gene succinate-CoA ligase GDP-forming subunit beta

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-GlcNAcylation via threonine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum lumen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
EGF domain-specific O-linked N-acetylglucosamine transferase
Names
EGF domain specific O-linked N-acetylglucosamine transferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019863.2 Reference ASM223467v1 Primary Assembly

    Range
    15618506..15632351
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020703274.2 → XP_020558933.1  EGF domain-specific O-linked N-acetylglucosamine transferase isoform X1

    UniProtKB/TrEMBL
    A0A3P9HCU9, H2LV80
    Related
    ENSORLP00000033891.2, ENSORLT00000044321.2
    Conserved Domains (1) summary
    pfam04577
    Location:243 → 466
    DUF563; Protein of unknown function (DUF563)

  2. XM_020703275.2 → XP_020558934.1  EGF domain-specific O-linked N-acetylglucosamine transferase isoform X2

    UniProtKB/TrEMBL
    A0A3P9IZ33
    Conserved Domains (1) summary
    pfam04577
    Location:215 → 438
    DUF563; Protein of unknown function (DUF563)

  3. XM_023954992.1 → XP_023810760.1  EGF domain-specific O-linked N-acetylglucosamine transferase isoform X2

    UniProtKB/TrEMBL
    A0A3P9IZ33
    Conserved Domains (1) summary
    pfam04577
    Location:215 → 438
    DUF563; Protein of unknown function (DUF563)

  4. XM_023954991.1 → XP_023810759.1  EGF domain-specific O-linked N-acetylglucosamine transferase isoform X1

    UniProtKB/TrEMBL
    A0A3P9HCU9, H2LV80
    Related
    ENSORLP00000046034.1, ENSORLT00000078911.1
    Conserved Domains (1) summary
    pfam04577
    Location:243 → 466
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials