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galnt16 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101166838, updated on 8-Mar-2024

Summary

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Gene symbol
galnt16
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16
See related
EnsemblRapid:ENSORLG00000008784
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See galnt16 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
16
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 22 NC_019880.2 (1013599..1030450)
102 previous assembly ASM31367v1 (GCF_000313675.1) 22 NC_019880.1 (314476..328303)

Chromosome 22 - NC_019880.2Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 7-like Neighboring gene disheveled-associated activator of morphogenesis 1 Neighboring gene jnk1/mapk8 associated membrane protein Neighboring gene uncharacterized LOC111946843 Neighboring gene NUMB endocytic adaptor protein Neighboring gene exonuclease 3'-5' domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019880.2 Reference ASM223467v1 Primary Assembly

    Range
    1013599..1030450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023951665.1 → XP_023807433.1  polypeptide N-acetylgalactosaminyltransferase 16 isoform X2

    UniProtKB/TrEMBL
    A0A3P9GY61
    Related
    ENSORLP00000056491.1, ENSORLT00000091890.1
    Conserved Domains (2) summary
    cd02510
    Location:143 → 437
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cl26069
    Location:453 → 522
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_023951663.1 → XP_023807431.1  polypeptide N-acetylgalactosaminyltransferase 16 isoform X1

    UniProtKB/TrEMBL
    A0A3P9GY61, H2LY18
    Related
    ENSORLP00000036424.2, ENSORLT00000044365.2
    Conserved Domains (2) summary
    cd02510
    Location:143 → 437
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:453 → 563
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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