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hs6st1a heparan sulfate 6-O-sulfotransferase 1a [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101166175, updated on 8-Mar-2024

Summary

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Gene symbol
hs6st1a
Gene description
heparan sulfate 6-O-sulfotransferase 1a
See related
EnsemblRapid:ENSORLG00000013805
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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See hs6st1a in Genome Data Viewer
Location:
chromosome: 22
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 22 NC_019880.2 (8305548..8368899, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 22 NC_019880.1 (7833837..7897582, complement)

Chromosome 22 - NC_019880.2Genomic Context describing neighboring genes Neighboring gene obg-like ATPase 1 Neighboring gene transcription factor Sp3 Neighboring gene UDP-glucose glycoprotein glucosyltransferase 1 Neighboring gene otolith matrix protein Neighboring gene activin A receptor, type 1 like Neighboring gene D-2-hydroxyglutarate dehydrogenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 1-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019880.2 Reference ASM223467v1 Primary Assembly

    Range
    8305548..8368899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004082491.4 → XP_004082539.1  heparan-sulfate 6-O-sulfotransferase 1-A

    UniProtKB/TrEMBL
    A0A3B3HVA0, A0A3P9HY83, A0A3P9L0K8
    Related
    ENSORLP00000035541.1, ENSORLT00000042645.2
    Conserved Domains (1) summary
    pfam03567
    Location:77 → 341
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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