U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

chpf2 chondroitin polymerizing factor 2 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101162559, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
chpf2
Gene description
chondroitin polymerizing factor 2
See related
EnsemblRapid:ENSORLG00000011783
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See chpf2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 20 NC_019878.2 (21185854..21191529, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 20 NC_019878.1 (19725998..19731678, complement)

Chromosome 20 - NC_019878.2Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor, X-box binding 1 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D3b Neighboring gene uncharacterized LOC101165183 Neighboring gene ATP-binding cassette, sub-family F (GCN20), member 2b

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019878.2 Reference ASM223467v1 Primary Assembly

    Range
    21185854..21191529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004081149.4 → XP_004081197.1  chondroitin sulfate glucuronyltransferase

    UniProtKB/TrEMBL
    A0A3P9LYH4, H2M8E9
    Related
    ENSORLP00000056840.1, ENSORLT00000097332.1
    Conserved Domains (2) summary
    pfam05679
    Location:245 → 750
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:132 → 271
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials