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LOC101162162 carbohydrate sulfotransferase 3 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101162162, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101162162
Gene description
carbohydrate sulfotransferase 3
See related
EnsemblRapid:ENSORLG00000009328
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
chst3
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Genomic context

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See LOC101162162 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 19 NC_019877.2 (11289116..11295941, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 19 NC_019877.1 (10124186..10131170, complement)

Chromosome 19 - NC_019877.2Genomic Context describing neighboring genes Neighboring gene F-box and leucine-rich repeat protein 15 Neighboring gene paired box 2b Neighboring gene growth hormone inducible transmembrane protein Neighboring gene cadherin related family member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chondroitin 6-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019877.2 Reference ASM223467v1 Primary Assembly

    Range
    11289116..11295941 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004080432.4 → XP_004080480.1  carbohydrate sulfotransferase 3

    See identical proteins and their annotated locations for XP_004080480.1

    UniProtKB/TrEMBL
    A0A3P9LW12, H2LZX4
    Conserved Domains (1) summary
    cl21551
    Location:222 → 406
    Sulfotransfer_3; Sulfotransferase family

  2. XM_020711921.2 → XP_020567580.1  carbohydrate sulfotransferase 3

    UniProtKB/TrEMBL
    A0A3P9LW12, H2LZX4
    Related
    ENSORLP00000044643.1, ENSORLT00000037857.2
    Conserved Domains (1) summary
    cl21551
    Location:222 → 406
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
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