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LOC101162023 transcription activator BRG1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101162023, updated on 8-Mar-2024

Summary

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Gene symbol
LOC101162023
Gene description
transcription activator BRG1
See related
EnsemblRapid:ENSORLG00000003955
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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See LOC101162023 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
33
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 1 NC_019859.2 (10481462..10500318, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 1 NC_019859.1 (9993957..10011069, complement)

Chromosome 1 - NC_019859.2Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 1 subunit mu 2 Neighboring gene low density lipoprotein receptor b Neighboring gene microtubule-associated serine/threonine-protein kinase 1 Neighboring gene autophagy related 4D, cysteine peptidase a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription activator BRG1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019859.2 Reference ASM223467v1 Primary Assembly

    Range
    10481462..10500318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020702324.2 → XP_020557983.2  transcription activator BRG1

    UniProtKB/TrEMBL
    A0A3B3H8K4, A0A3P9KK92
    Related
    ENSORLP00000028259.2, ENSORLT00000036279.2
    Conserved Domains (7) summary
    cd05516
    Location:1471 → 1577
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:660 → 702
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:506 → 578
    HSA; domain in helicases and associated with SANT domains
    pfam08880
    Location:224 → 257
    QLQ
    pfam14619
    Location:1332 → 1399
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl25548
    Location:459 → 622
    DUF4670; Domain of unknown function (DUF4670)
    cl26465
    Location:793 → 1275
    SNF2_N; SNF2 family N-terminal domain
Nucleotide Protein
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