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cacna1da calcium channel, voltage-dependent, L type, alpha 1D subunit, a [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101157531, updated on 8-Mar-2024

Summary

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Gene symbol
cacna1da
Gene description
calcium channel, voltage-dependent, L type, alpha 1D subunit, a
See related
EnsemblRapid:ENSORLG00000002583
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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See cacna1da in Genome Data Viewer
Location:
chromosome: 5
Exon count:
49
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 5 NC_019863.2 (5201314..5272503)
102 previous assembly ASM31367v1 (GCF_000313675.1) 5 NC_019863.1 (3631516..3702441)

Chromosome 5 - NC_019863.2Genomic Context describing neighboring genes Neighboring gene transketolase-like Neighboring gene bicaudal D homolog 2 (Drosophila) Neighboring gene parapinopsin-like Neighboring gene voltage-dependent calcium channel subunit alpha-2/delta-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent L-type calcium channel subunit alpha-1D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019863.2 Reference ASM223467v1 Primary Assembly

    Range
    5201314..5272503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023954780.1 → XP_023810548.1  voltage-dependent L-type calcium channel subunit alpha-1D isoform X1

    UniProtKB/TrEMBL
    A0A3B3I7Q7
    Related
    ENSORLP00000063925.1, ENSORLT00000073625.1
    Conserved Domains (4) summary
    pfam00520
    Location:98 → 401
    Ion_trans; Ion transport protein
    pfam08763
    Location:1530 → 1601
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1626 → 2133
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1458 → 1528
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  2. XM_023954782.1 → XP_023810550.1  voltage-dependent L-type calcium channel subunit alpha-1D isoform X3

    UniProtKB/TrEMBL
    A0A3B3I7Q7
    Related
    ENSORLP00000081936.1, ENSORLT00000090611.1
    Conserved Domains (4) summary
    pfam00520
    Location:1173 → 1426
    Ion_trans; Ion transport protein
    pfam08763
    Location:1499 → 1570
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1595 → 2102
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1427 → 1497
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  3. XM_023954781.1 → XP_023810549.1  voltage-dependent L-type calcium channel subunit alpha-1D isoform X2

    UniProtKB/TrEMBL
    A0A3B3I7Q7
    Related
    ENSORLP00000040166.2, ENSORLT00000037396.2
    Conserved Domains (4) summary
    pfam00520
    Location:98 → 401
    Ion_trans; Ion transport protein
    pfam08763
    Location:1510 → 1581
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1606 → 2113
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1438 → 1508
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  4. XM_023954783.1 → XP_023810551.1  voltage-dependent L-type calcium channel subunit alpha-1D isoform X4

    UniProtKB/TrEMBL
    A0A3B3I7Q7
    Conserved Domains (4) summary
    pfam00520
    Location:1173 → 1426
    Ion_trans; Ion transport protein
    pfam08763
    Location:1499 → 1570
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1595 → 2102
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1427 → 1497
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  5. XM_023954785.1 → XP_023810553.1  voltage-dependent L-type calcium channel subunit alpha-1D isoform X6

    UniProtKB/TrEMBL
    A0A3B3I7Q7
    Related
    ENSORLP00000027822.2, ENSORLT00000034075.2
    Conserved Domains (4) summary
    pfam00520
    Location:98 → 401
    Ion_trans; Ion transport protein
    pfam08763
    Location:1505 → 1576
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1601 → 2108
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1433 → 1503
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  6. XM_023954784.1 → XP_023810552.1  voltage-dependent L-type calcium channel subunit alpha-1D isoform X5

    UniProtKB/TrEMBL
    A0A3B3I7Q7
    Conserved Domains (4) summary
    pfam00520
    Location:98 → 401
    Ion_trans; Ion transport protein
    pfam08763
    Location:1485 → 1556
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1581 → 2088
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1413 → 1483
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  7. XM_023954786.1 → XP_023810554.1  voltage-dependent L-type calcium channel subunit alpha-1D isoform X7

    UniProtKB/TrEMBL
    A0A3B3I7Q7
    Related
    ENSORLP00000080620.1, ENSORLT00000079365.1
    Conserved Domains (4) summary
    pfam00520
    Location:1148 → 1401
    Ion_trans; Ion transport protein
    pfam08763
    Location:1474 → 1545
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1570 → 2077
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1402 → 1472
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
Nucleotide Protein
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