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mrps18a mitochondrial ribosomal protein S18A [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101156934, updated on 8-Mar-2024

Summary

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Gene symbol
mrps18a
Gene description
mitochondrial ribosomal protein S18A
See related
EnsemblRapid:ENSORLG00000023864
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See mrps18a in Genome Data Viewer
Location:
chromosome: 24
Exon count:
6
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 24 NC_019882.2 (15040923..15044511)
102 previous assembly ASM31367v1 (GCF_000313675.1) 24 NC_019882.1 (14959605..14963083)

Chromosome 24 - NC_019882.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110017700 Neighboring gene uncharacterized LOC110017738 Neighboring gene radial spoke head component 9 Neighboring gene transmembrane protein 63A Neighboring gene G-protein coupled receptor family C group 6 member A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small ribosomal subunit rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mitochondrial small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
39S ribosomal protein S18a, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019882.2 Reference ASM223467v1 Primary Assembly

    Range
    15040923..15044511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004083722.4 → XP_004083770.2  39S ribosomal protein S18a, mitochondrial

    UniProtKB/TrEMBL
    A0A3B3ICZ7, A0A3P9LPB8
    Related
    ENSORLP00000041993.1, ENSORLT00000046590.2
    Conserved Domains (1) summary
    pfam01084
    Location:90 → 138
    Ribosomal_S18; Ribosomal protein S18
Nucleotide Protein
Heading Accession and Version

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