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arpp21 cAMP-regulated phosphoprotein, 21 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101156509, updated on 8-Mar-2024

Summary

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Gene symbol
arpp21
Gene description
cAMP-regulated phosphoprotein, 21
See related
EnsemblRapid:ENSORLG00000011606
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See arpp21 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
21
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 11 NC_019869.2 (22025179..22033360, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 11 NC_019869.1 (21653086..21661288, complement)

Chromosome 11 - NC_019869.2Genomic Context describing neighboring genes Neighboring gene doublecortin-like kinase 3 Neighboring gene zinc finger TRAF-type containing 1 Neighboring gene microRNA mir-128 Neighboring gene programmed cell death 6 interacting protein Neighboring gene upstream binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cAMP-regulated phosphoprotein 21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019869.2 Reference ASM223467v1 Primary Assembly

    Range
    22025179..22033360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011481205.3 → XP_011479507.1  cAMP-regulated phosphoprotein 21 isoform X2

    UniProtKB/TrEMBL
    A0A3P9LD86
    Related
    ENSORLP00000071999.1, ENSORLT00000090766.1
    Conserved Domains (2) summary
    cd02642
    Location:136 → 196
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam12752
    Location:219 → 267
    SUZ; SUZ domain

  2. XM_023960092.1 → XP_023815860.1  cAMP-regulated phosphoprotein 21 isoform X1

    UniProtKB/TrEMBL
    A0A3P9LD86, H2M7T7
    Related
    ENSORLP00000014545.3, ENSORLT00000014546.3
    Conserved Domains (3) summary
    cd02642
    Location:136 → 196
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam12752
    Location:219 → 267
    SUZ; SUZ domain
    cl26464
    Location:321 → 592
    Atrophin-1; Atrophin-1 family

  3. XM_020707310.2 → XP_020562969.1  cAMP-regulated phosphoprotein 21 isoform X1

    UniProtKB/TrEMBL
    A0A3P9LD86, H2M7T7
    Conserved Domains (3) summary
    cd02642
    Location:136 → 196
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam12752
    Location:219 → 267
    SUZ; SUZ domain
    cl26464
    Location:321 → 592
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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