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LOC101156078 torsin-1A-interacting protein 2 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101156078, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101156078
Gene description
torsin-1A-interacting protein 2
See related
EnsemblRapid:ENSORLG00000029154
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See LOC101156078 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 4 NC_019862.2 (29429765..29442113, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 4 NC_019862.1 (31606422..31618839, complement)

Chromosome 4 - NC_019862.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101174739 Neighboring gene chemokine (C motif) receptor 1a, duplicate 1 Neighboring gene torsin-1A-interacting protein 2 Neighboring gene olfactomedin-like 2Ba Neighboring gene activating transcription factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019862.2 Reference ASM223467v1 Primary Assembly

    Range
    29429765..29442113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011474504.3 → XP_011472806.1  torsin-1A-interacting protein 2

    UniProtKB/TrEMBL
    A0A3P9MF42
    Related
    ENSORLP00000064880.1, ENSORLT00000049241.1
    Conserved Domains (2) summary
    pfam05609
    Location:304 → 525
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
    pfam10243
    Location:14 → 264
    MIP-T3; Microtubule-binding protein MIP-T3
Nucleotide Protein
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