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mpdu1b mannose-P-dolichol utilization defect 1b [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101155303, updated on 8-Mar-2024

Summary

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Gene symbol
mpdu1b
Gene description
mannose-P-dolichol utilization defect 1b
See related
EnsemblRapid:ENSORLG00000010635
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
mpdu1
Orthologs
human zebrafish all
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Genomic context

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See mpdu1b in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 18 NC_019876.2 (26487512..26491034)
102 previous assembly ASM31367v1 (GCF_000313675.1) 18 NC_019876.1 (27818992..27822375)

Chromosome 18 - NC_019876.2Genomic Context describing neighboring genes Neighboring gene transmembrane 4 L six family member 21b Neighboring gene metallo-beta-lactamase domain containing 1 Neighboring gene SRY-box transcription factor 19b Neighboring gene sentrin-specific protease 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannose-P-dolichol utilization defect 1 protein
Names
mannose-P-dolichol utilization defect 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019876.2 Reference ASM223467v1 Primary Assembly

    Range
    26487512..26491034
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004080008.4 → XP_004080056.1  mannose-P-dolichol utilization defect 1 protein

    UniProtKB/TrEMBL
    A0A3B3H8N3, A0A3P9MBB9
    Related
    ENSORLP00000028289.1, ENSORLT00000028154.2
    Conserved Domains (2) summary
    TIGR00951
    Location:48 → 243
    2A43; Lysosomal Cystine Transporter
    pfam04193
    Location:51 → 109
    PQ-loop; PQ loop repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials