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setd4 SET domain containing 4 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101154890, updated on 8-Mar-2024

Summary

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Gene symbol
setd4
Gene description
SET domain containing 4
See related
EnsemblRapid:ENSORLG00000000434
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See setd4 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
16
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 15 NC_019873.2 (1824535..1837605, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 15 NC_019873.1 (129483..141517, complement)

Chromosome 15 - NC_019873.2Genomic Context describing neighboring genes Neighboring gene propionyl-CoA carboxylase subunit alpha Neighboring gene piezo type mechanosensitive ion channel component 1 (Er blood group) Neighboring gene chromatin licensing and DNA replication factor 1 Neighboring gene carbonyl reductase 1 Neighboring gene mix-type homeobox gene 1 Neighboring gene transmembrane protein 254

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K4 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine dimethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-lysine monomethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-lysine trimethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SET domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019873.2 Reference ASM223467v1 Primary Assembly

    Range
    1824535..1837605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020709235.2 → XP_020564894.1  SET domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A3P9LU84
    Conserved Domains (1) summary
    pfam09273
    Location:312 → 424
    Rubis-subs-bind; Rubisco LSMT substrate-binding

  2. XM_011484006.3 → XP_011482308.1  SET domain-containing protein 4 isoform X1

    See identical proteins and their annotated locations for XP_011482308.1

    UniProtKB/TrEMBL
    A0A3P9LU84
    Related
    ENSORLP00000000535.3, ENSORLT00000000535.3
    Conserved Domains (1) summary
    pfam09273
    Location:312 → 424
    Rubis-subs-bind; Rubisco LSMT substrate-binding

  3. XM_020709236.2 → XP_020564895.1  SET domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A3P9LU84
    Conserved Domains (1) summary
    pfam09273
    Location:276 → 388
    Rubis-subs-bind; Rubisco LSMT substrate-binding

  4. XM_020709234.2 → XP_020564893.1  SET domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A3P9LU84
    Conserved Domains (1) summary
    pfam09273
    Location:312 → 424
    Rubis-subs-bind; Rubisco LSMT substrate-binding

  5. XM_011484009.2 → XP_011482311.1  SET domain-containing protein 4 isoform X3

    See identical proteins and their annotated locations for XP_011482311.1

    UniProtKB/TrEMBL
    A0A3P9LU84
    Conserved Domains (1) summary
    pfam09273
    Location:255 → 364
    Rubis-subs-bind; Rubisco LSMT substrate-binding

RNA

  1. XR_002291769.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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