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lman2la lectin, mannose-binding 2-like a [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101154794, updated on 19-Jun-2024

Summary

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Gene symbol
lman2la
Gene description
lectin, mannose-binding 2-like a
See related
EnsemblRapid:ENSORLG00000007255
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
lman2l
Orthologs
zebrafish all
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Genomic context

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See lman2la in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 12 NC_019870.2 (12408929..12417374, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 12 NC_019870.1 (11850016..11859691, complement)

Chromosome 12 - NC_019870.2Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 3 Neighboring gene WW domain binding protein 1 Neighboring gene mitochondrial fission process 1 Neighboring gene uncharacterized LOC101161254 Neighboring gene uncharacterized LOC110016008

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein
Names
lectin, mannose binding 2 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019870.2 Reference ASM223467v1 Primary Assembly

    Range
    12408929..12417374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020707653.2 → XP_020563312.1  VIP36-like protein isoform X3

    UniProtKB/TrEMBL
    A0A3P9LC55
    Related
    ENSORLP00000076560.1, ENSORLT00000104905.1
    Conserved Domains (1) summary
    cl14058
    Location:4 → 244
    lectin_L-type; legume lectins

  2. XM_011481776.3 → XP_011480078.1  VIP36-like protein isoform X2

    UniProtKB/TrEMBL
    A0A3P9MK79, H2LSN6
    Related
    ENSORLP00000047167.1, ENSORLT00000067850.1
    Conserved Domains (1) summary
    cl14058
    Location:51 → 280
    lectin_L-type; legume lectins

  3. XM_023960796.1 → XP_023816564.1  VIP36-like protein isoform X1

    UniProtKB/TrEMBL
    A0A3B3H9C0, A0A3P9MK79
    Related
    ENSORLP00000028539.1, ENSORLT00000047086.2
    Conserved Domains (1) summary
    cl14058
    Location:51 → 291
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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