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CHST6 carbohydrate sulfotransferase 6 [ Gorilla gorilla gorilla (western lowland gorilla) ]

Gene ID: 101136976, updated on 1-Oct-2024

Summary

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Gene symbol
CHST6
Gene description
carbohydrate sulfotransferase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Gorilla gorilla gorilla (sub-species: gorilla)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
Orthologs
human all
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Genomic context

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See CHST6 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 18 NC_073242.2 (105956640..106002370, complement)
RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 16 NC_073240.1 (96396119..96405936, complement)

Chromosome 18 - NC_073242.2Genomic Context describing neighboring genes Neighboring gene craniofacial development protein 1 Neighboring gene small nucleolar RNA SNORA76 Neighboring gene transmembrane protein 170A Neighboring gene carbohydrate sulfotransferase 5 Neighboring gene transmembrane protein 231

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

Genomic

  1. NC_073242.2 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Range
    105956640..106002370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063700340.1 → XP_063556410.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A2I2Z6R1

  2. XM_063700338.1 → XP_063556408.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A2I2Z6R1

  3. XM_063700339.1 → XP_063556409.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A2I2Z6R1

  4. XM_031002655.3 → XP_030858515.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A2I2Z6R1
    Conserved Domains (1) summary
    pfam13469
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  5. XM_063700337.1 → XP_063556407.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A2I2Z6R1

RNA

  1. XR_008672801.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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