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CNTN1 contactin 1 [ Gorilla gorilla gorilla (western lowland gorilla) ]

Gene ID: 101130831, updated on 1-Oct-2024

Summary

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Gene symbol
CNTN1
Gene description
contactin 1
See related
Ensembl:ENSGGOG00000016609
Gene type
protein coding
RefSeq status
MODEL
Organism
Gorilla gorilla gorilla (sub-species: gorilla)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
Orthologs
human mouse all
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Genomic context

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See CNTN1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 10 NC_073234.2 (60205899..60586964, complement)
RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 12 NC_073236.1 (60207406..60588135, complement)

Chromosome 10 - NC_073234.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134756517 Neighboring gene PDZ domain containing ring finger 4 Neighboring gene methionine aminopeptidase 1-like Neighboring gene uncharacterized LOC134756518 Neighboring gene U6 spliceosomal RNA Neighboring gene mucin 19, oligomeric

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

Genomic

  1. NC_073234.2 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Range
    60205899..60586964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031000864.3 → XP_030856724.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2I2YYD1
    Conserved Domains (8) summary
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:40 → 132
    Ig1_Contactin-1; First immunoglobulin (Ig) domain of contactin-1
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
    cd05852
    Location:429 → 501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cd00063
    Location:610 → 697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd04970
    Location:520 → 601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    pfam00041
    Location:811 → 892
    fn3; Fibronectin type III domain
    cl11960
    Location:332 → 408
    Ig; Immunoglobulin domain

  2. XM_063694062.1 → XP_063550132.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2I2YYD1

  3. XM_019039242.4 → XP_018894787.2  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2I2YYD1
    Conserved Domains (8) summary
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:40 → 132
    Ig1_Contactin-1; First immunoglobulin (Ig) domain of contactin-1
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
    cd05852
    Location:429 → 501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cd00063
    Location:610 → 697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd04970
    Location:520 → 601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    pfam00041
    Location:811 → 892
    fn3; Fibronectin type III domain
    cl11960
    Location:332 → 408
    Ig; Immunoglobulin domain

  4. XM_031000866.3 → XP_030856726.1  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2I2Z2F5
    Conserved Domains (6) summary
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:40 → 132
    Ig1_Contactin-1; First immunoglobulin (Ig) domain of contactin-1
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
    cd05852
    Location:429 → 501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cd04970
    Location:520 → 602
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:332 → 408
    Ig; Immunoglobulin domain

  5. XM_063694063.1 → XP_063550133.1  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2I2Z2F5

  6. XM_004052966.5 → XP_004053014.3  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2I2Z2F5
    Conserved Domains (6) summary
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:40 → 132
    Ig1_Contactin-1; First immunoglobulin (Ig) domain of contactin-1
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
    cd05852
    Location:429 → 501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cd04970
    Location:520 → 602
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:332 → 408
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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