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SDCBP2 syndecan binding protein 2 [ Gorilla gorilla gorilla (western lowland gorilla) ]

Gene ID: 101125337, updated on 1-Oct-2024

Summary

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Gene symbol
SDCBP2
Gene description
syndecan binding protein 2
See related
Ensembl:ENSGGOG00000003373
Gene type
protein coding
RefSeq status
MODEL
Organism
Gorilla gorilla gorilla (sub-species: gorilla)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
Orthologs
human mouse all
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Genomic context

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See SDCBP2 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 21 NC_073245.2 (11231707..11250834, complement)
RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 20 NC_073244.1 (11143980..11163094, complement)

Chromosome 21 - NC_073245.2Genomic Context describing neighboring genes Neighboring gene RAD21 cohesin complex component like 1 Neighboring gene syntaphilin Neighboring gene uncharacterized LOC115931696 Neighboring gene FKBP prolyl isomerase 1A Neighboring gene uncharacterized LOC129528993

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntenin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

Genomic

  1. NC_073245.2 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Range
    11231707..11250834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004061663.5 → XP_004061711.1  syntenin-2 isoform X2

    See identical proteins and their annotated locations for XP_004061711.1

    UniProtKB/TrEMBL
    G3QLG3
    Conserved Domains (2) summary
    cd00136
    Location:117 → 185
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
    cd00992
    Location:191 → 264
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_055372406.2 → XP_055228381.1  syntenin-2 isoform X2

    UniProtKB/TrEMBL
    G3QLG3

  3. XM_063702426.1 → XP_063558496.1  syntenin-2 isoform X1

  4. XM_019017019.3 → XP_018872564.1  syntenin-2 isoform X2

    UniProtKB/TrEMBL
    G3QLG3
    Related
    ENSGGOP00000003314.2
    Conserved Domains (2) summary
    cd00136
    Location:117 → 185
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
    cd00992
    Location:191 → 264
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  5. XM_055372407.2 → XP_055228382.1  syntenin-2 isoform X3

Nucleotide Protein
Heading Accession and Version

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