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PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 [ Gorilla gorilla gorilla (western lowland gorilla) ]

Gene ID: 101124760, updated on 1-Oct-2024

Summary

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Gene symbol
PRPF4
Gene description
pre-mRNA splicing tri-snRNP complex factor PRPF4
See related
Ensembl:ENSGGOG00000006943
Gene type
protein coding
RefSeq status
MODEL
Organism
Gorilla gorilla gorilla (sub-species: gorilla)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
Orthologs
human mouse all
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Genomic context

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See PRPF4 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 13 NC_073237.2 (109626835..109643970)
RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 9 NC_073233.1 (110165255..110182378)

Chromosome 13 - NC_073237.2Genomic Context describing neighboring genes Neighboring gene solute carrier family 31 member 1 Neighboring gene endogenous retrovirus group K member 19 Env polyprotein-like Neighboring gene cell division cycle 26 Neighboring gene ring finger protein 183 Neighboring gene WD repeat domain 31

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U4 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U6 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U4/U6 small nuclear ribonucleoprotein Prp4
Names
pre-mRNA processing factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

Genomic

  1. NC_073237.2 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Range
    109626835..109643970
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004048463.5 → XP_004048511.1  U4/U6 small nuclear ribonucleoprotein Prp4 isoform X2

    See identical proteins and their annotated locations for XP_004048511.1

    UniProtKB/TrEMBL
    A0A2I2ZFV2, G3QVM3
    Related
    ENSGGOP00000006800.3
    Conserved Domains (3) summary
    smart00500
    Location:102 → 140
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    cd00200
    Location:232 → 518
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:233 → 270
    7WD40; WD40 repeat [structural motif]

  2. XM_019033404.4 → XP_018888949.1  U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1

    UniProtKB/TrEMBL
    A0A2I2ZFV2
    Conserved Domains (3) summary
    smart00500
    Location:103 → 141
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    cd00200
    Location:233 → 519
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:234 → 271
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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