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CSPG5 chondroitin sulfate proteoglycan 5 [ Ovis aries (sheep) ]

Gene ID: 101122060, updated on 8-Mar-2024

Summary

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Gene symbol
CSPG5
Gene description
chondroitin sulfate proteoglycan 5
See related
EnsemblRapid:ENSOARG00020025218
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
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Genomic context

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See CSPG5 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 19 NC_056072.1 (52101362..52113760)

Chromosome 19 - NC_056072.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132658188 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit C1 Neighboring gene elongator acetyltransferase complex subunit 6 Neighboring gene SREBF chaperone Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056072.1 Chromosome 19 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056072.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    52101362..52113760
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042236317.1 → XP_042092251.1  chondroitin sulfate proteoglycan 5 isoform X1

    UniProtKB/TrEMBL
    W5NZZ9
    Related
    ENSOARP00020032803.2, ENSOART00020039587.2
    Conserved Domains (2) summary
    pfam06566
    Location:34 → 278
    Chon_Sulph_att; Chondroitin sulphate attachment domain
    pfam06567
    Location:451 → 542
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain

  2. XM_042236318.1 → XP_042092252.1  chondroitin sulfate proteoglycan 5 isoform X2

    UniProtKB/TrEMBL
    W5NZZ9
    Related
    ENSOARP00020032795.2, ENSOART00020039576.2
    Conserved Domains (2) summary
    pfam06566
    Location:34 → 278
    Chon_Sulph_att; Chondroitin sulphate attachment domain
    pfam06567
    Location:451 → 510
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain
Nucleotide Protein Strain
Heading Accession and Version

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