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CNTN5 contactin 5 [ Ovis aries (sheep) ]

Gene ID: 101121624, updated on 8-Mar-2024

Summary

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Gene symbol
CNTN5
Gene description
contactin 5
See related
EnsemblRapid:ENSOARG00020022860
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
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Genomic context

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See CNTN5 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 15 NC_056068.1 (8449512..10112356, complement)

Chromosome 15 - NC_056068.1Genomic Context describing neighboring genes Neighboring gene catenin alpha-1-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC121816663 Neighboring gene L-lactate dehydrogenase B chain-like Neighboring gene transfer RNA serine (anticodon GGA) Neighboring gene NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like Neighboring gene putative teratocarcinoma-derived growth factor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056068.1 Chromosome 15 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056068.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    8449512..10112356 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027979105.3 → XP_027834906.2  contactin-5

    UniProtKB/TrEMBL
    W5PDN9
    Related
    ENSOARP00020029559.2, ENSOART00020035765.2
    Conserved Domains (6) summary
    smart00408
    Location:119 → 180
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:497 → 568
    IG; Immunoglobulin
    smart00410
    Location:578 → 667
    IG_like; Immunoglobulin like
    cd00063
    Location:671 → 768
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:407 → 411
    Ig; Ig strand B [structural motif]
    cl11960
    Location:392 → 475
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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